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• Inconsistent thermostatistics and negative absolute temperatures
  J Dunkel and S Hilbert
  Preprint, 2013  

• Confinement stabilizes spiral vortex state of bacterial suspensions
  H Wioland, F G Woodhouse, J Dunkel, J O Kessler and R E Goldstein
  Preprint, 2013  

• Fluid dynamics of bacterial turbulence
  J Dunkel, S Heidenreich, K Drescher, H H Wensink, M Bär and R E Goldstein
  Submitted, 2013   pdf arxiv

• Minimal continuum theories of structure formation in dense active fluids
  J Dunkel, S Heidenreich, M Bär and R E Goldstein
  To appear in New J Phys, 2013   arxiv

• Ciliary contact interactions dominate surface scattering of swimming eukaryotes
  V Kantsler, J Dunkel, M Polin and R E Goldstein
  PNAS 110(4): 1187-1192, 2013   pdf doi
  Watch here and here

• Meso-scale turbulence in living fluids
  H H Wensink, J Dunkel, S Heidenreich, K Drescher, R E Goldstein, H Löwen and J M Yeomans
  PNAS 109(36): 14308-14313, 2012   pdf doi
See also Physik Journal

• Improving risk assessment for biodiversity conservation
  J Dunkel and S Weber
  PNAS 109(35): E2304, 2012   pdf doi

• Fluid dynamics and noise in bacterial cell-cell and cell-surface scattering
  K Drescher, J Dunkel, L H Cisneros, S Ganguly and R E Goldstein
  PNAS 108(27): 10940-10945, 2011   pdf doi

• Levy fluctuations and mixing in dilute suspensions of algae and bacteria
  I M Zaid, J Dunkel and J M Yeomans
  J R Soc Interface 8: 1314-1331, 2011   pdf doi arxiv

• Entropy and statistics of asexual reproduction in freshwater planarians
  S Quinodoz, M Thomas, J Dunkel and E-M Schötz
  J Stat Phys 142(6): 1324-1336, 2011   pdf doi

• Memory and obesity affect the population dynamics of asexual freshwater planarians
  J Dunkel, J Talbot and E-M Schötz
  Physical Biology 8: 026003, 2011   pdf doi
  Included in Highlights of 2011

• Stochastic root finding and efficient estimation of convex risk measures
  J Dunkel and S Weber
  Operations Research 58(5): 1505-1521, 2010   pdf doi

• CUDA simulations of active dumbbell suspensions
  V B Putz, J Dunkel and J M Yeomans
  Chem Phys 375(2-3): 557-567, 2010   pdf doi arxiv

• Swimmer-tracer scattering at low Reynolds number
  J Dunkel, V B Putz, I M Zaid and J M Yeomans
  Soft Matter 6: 4268-4276, 2010   pdf doi arxiv

• Noisy swimming at low Reynolds numbers
  J Dunkel and I M Zaid
  Phys Rev E 80: 021903, 2009   pdf doi arxiv
  

• Nonlocal observables and lightcone-averaging in relativistic thermodynamics
  J Dunkel, P Hänggi and S Hilbert
  Nature Physics 5: 741-747, 2009   pdf doi arxiv
  See also Nature Physics News & Views

• Stationarity, ergodicity and entropy in relativistic systems
  D Cubero and J Dunkel
  EPL 87: 30005, 2009   pdf doi arxiv

• Relativistic Brownian motion
  J Dunkel and P Hänggi
  Physics Reports 471(1): 1-73, 2009   pdf doi arxiv

• Time parameters and Lorentz transformations of relativistic stochastic processes
  J Dunkel, P Hänggi and S Weber
  Phys Rev E 79: 010101(R), 2009   pdf doi arxiv

• Thermal equilibrium and statistical thermometers in special relativity
  D Cubero, J Casado-Pascual, J Dunkel, P Talkner and P Hänggi
  Phys Rev Lett 99: 170601, 2007   pdf doi arxiv
  See also Physics Today, Nature Research Highlights and Nature News & Views

• Relative entropy, Haar measures and relativistic canonical velocity distributions
  J Dunkel, P Talkner and P Hänggi
  New J Phys 9: 144, 2007   pdf doi arxiv

• Relativistic diffusion processes and random walk models
  J Dunkel, P Talkner and P Hänggi
  Phys Rev D 75: 043001, 2007   pdf doi arxiv

• One-dimensional nonrelativistic and relativistic Brownian motions:
  A microscopic collision model
  J Dunkel and P Hänggi
  Physica A 374: 559-572, 2007   pdf doi arxiv

• Relativistic Brownian motion:
  From a microscopic binary collision model to the Langevin equation
  J Dunkel and P Hänggi
  Phys Rev E 74: 051106, 2006   pdf doi arxiv
  Erratum, Phys Rev E 74: 069902(E), 2006   pdf doi

• Nonanalytic microscopic phase transitions and temperature oscillations in the microcanonical ensemble: An exactly solvable 1d-model for evaporation
  S Hilbert and J Dunkel
  Phys Rev E 74: 011120, 2006   pdf doi arxiv

• Phase transitions in small systems: Microcanonical vs canonical ensembles
  J Dunkel and S Hilbert
  Physica A 370(2): 390-406, 2006   pdf doi arxiv

• Accretion of helium and metal-rich gas onto neutron stars and black holes
  at high luminosities
  J Dunkel, J Chluba and R A Sunyaev
  Astron Lett 32(4): 288-294, 2006   pdf doi arxiv
  Russian translation pdf

• Theory of relativistic Brownian motion: The (1+3)-dimensional case
  J Dunkel and P Hänggi
  Phys Rev E 72: 036106, 2005   pdf doi

• Theory of relativistic Brownian motion: The (1+1)-dimensional case
  J Dunkel and P Hänggi
  Phys Rev E 71: 016124, 2005   pdf doi

• Time-dependent entropy of simple quantum model systems
  J Dunkel and S A Trigger
  Phys Rev A 71: 052102, 2005   pdf doi

• Active and passive Brownian motion of charged particles in 2D-plasma models
  J Dunkel, W Ebeling and S A Trigger
  Phys Rev E 70: 046406, 2004   pdf doi

• On the Relationship between Modified Newtonian Dynamics and Dark Matter
  J Dunkel
  Astrophys J Lett., 604(1): L37-L40, 2004   pdf doi arxiv

• Stochastic resonance in biological nonlinear evolution models
  J Dunkel, S Hilbert, L Schimansky-Geier and P Hänggi
  Phys Rev E 69: 056118, 2004   pdf doi
  

• Exact solutions for evolutionary strategies on harmonic landscapes
  J Dunkel, L Schimansky-Geier and W Ebeling
  Evol Comp J 12(1): 1-17, 2004   pdf doi

• Kramers problem in evolutionary strategies
  J Dunkel, W Ebeling, L Schimansky-Geier and P Hänggi
  Phys Rev E 67: 061118, 2003   pdf doi
  

• Phase behavior and collective excitations of the Morse ring chain
  A Chetverikov and J Dunkel
  Eur Phys J B 35(2): 239-253, 2003  pdf doi

• A dissipative one-dimensional collision model with intermediate energy storage
  J Dunkel, W Ebeling, J W P Schmelzer and G Röpke
  Physica D 185(3-4): 158-174, 2003   pdf doi

• Coherent motions and clusters in a dissipative Morse ring chain
  J Dunkel, W Ebeling, U Erdmann and V A Makarov
  Int J Bif & Chaos 12(11): 2359-2377, 2002   pdf doi

• Thermodynamics and transport in active Morse chains
  J Dunkel, W Ebeling and U Erdmann
  Eur Phys J B 24(4): 511-524, 2001   pdf doi

• Nonlinear dynamics and fluctuations of dissipative Toda chains
  W Ebeling, U Erdmann, J Dunkel and M Jenssen
  J Stat Phys 101(1/2): 443-457, October 2000   pdf doi

• Reliable quantification and efficient estimation of credit risk
  J Dunkel and S Weber
  In Risk Measures and Attitudes, LMUexcellent Symposium 2010,
  EAA Lecture Notes, pp 35-43, Springer, 2013   pdf doi

• Relativ heiss: Brownsche Bewegung und Thermodynamik in der Relativitatstheorie
  J Dunkel
  Physik Journal 10(8/9): 49-53, 2011   pdf web

• Low Reynolds number hydrodynamics of asymmetric, oscillating dumbbell pairs
  V B Putz and J Dunkel
  EPJ-Special Topics 187: 135-144, 2010   pdf doi arxiv

• Efficient Monte-Carlo Methods for convex risk measures in portfolio credit risk models
  J Dunkel and S Weber
  In Proceedings of the 2007 Winter Simulation Conference, pp 937-945
  IEEE Piscataway, NJ, 2007  pdf

• Langevin-Gleichungen mit nichtlinearer Reibung
  J Dunkel, S Hilbert and P Hänggi
  In Irreversible Prozesse und Selbstorganization, pp 11-21
  Logos Verlag (Berlin), 2006   pdf

• Effiziente Monte-Carlo-Methoden für konvexe Risikomasse
  J Dunkel
  In Deutscher SCOR-Preis für Aktuarwissenschaften 2005: Zusammenfassung eingereichter Arbeiten, vol 4 of Schriftenreihe der SCOR Deutschland Rueckversicherungs-AG, pp 41-48
  Verlag Versicherungswirtschaft, Karlsruhe, 2005 (ISBN 3-89952-232-X)

• Klimontovich's contributions to the kinetic theory of nonlinear Brownian motion
  W Ebeling, J Dunkel, U Erdmann and S A Trigger
  In Proceedings of the International Conference "Kinetic Theory of Nonideal Plasmas"
  J Phys Conf Ser 11: 89-98, 2005   pdf doi

• Dissipative collisions of one-dimensional Morse-clusters with intermediate energy storage
  J Dunkel, W Ebeling, J W P Schmelzer and G Röpke
  In Nucleation Theory and Applications, pp 367-394
  JINR Publishing House Dubna, 2002

• Nonlinear waves and moving clusters on rings
  U Erdmann, J Dunkel, and W Ebeling
  In Traffic and Granular Flow '99: Social, Traffic and Granular Dynamics, pp 239-244
  Springer (Heidelberg/Berlin), 2000   doi

• Relativistic Brownian motion and diffusion processes
  J Dunkel, PhD thesis, Institut für Physik, Universität Augsburg, July 2008   pdf

• Effiziente Monte-Carlo-Methoden für konvexe Risikomaße
  J Dunkel, Diploma thesis, Institut für Mathematik, Humboldt-Universität zu Berlin, May 2005   ps

• Evolutionsmodelle mit nichtlokaler Selektion
  J Dunkel, Diploma thesis, Institut für Physik, Humboldt-Universität zu Berlin, April 2004  ps