### Publications

- Bachman, S.D., J.R. Taylor, K.A. Adams, and P. Hosegood (2017) Mesoscale and submesoscale effects on the mixed layer depth in the Southern Ocean,
*J. Phys. Ocean.,*in press. - Kaminski, A.K, C.P. Caulfield, and J.R. Taylor (2017) Nonlinear evolution of linear optimal perturbations of strongly stratified shear layers,
*J. Fluid Mech.,*in press. - Taylor, J.R., and Q. Zhou (2017) A multi-parameter criterion for layer formation in a stratified shear flow using sorted buoyancy coordinates,
*J. Fluid Mech.,*in press. - Adams, K., P. Hosegood, J.R. Taylor, J.-B. Sallee, S. Bachman, R. Torres, M. Stamper (2017) Frontal circulation and submesoscale variability during the formation of a Southern Ocean mesoscale eddys,
*J. Phys. Ocean..,*in press. - Q. Zhou, J.R. Taylor, C.P. Caulfield, and P.F. Linden (2017) Diapycnal mixing in layered stratified plane Couette flow quantified in a tracer-based coordinate,
*J. Fluid Mech.,*in press. - Q. Zhou, J.R. Taylor, C.P. Caulfield (2017) Self-similar mixing in stratified plane Couette flow for varying Prandtl number,
*J. Fluid Mech.,*in press. - Whitt, D.B, Levy, M, and J.R. Taylor (2017), Synoptic-to-planetary scale wind variability enhances phytoplankton biomass at ocean fronts,
*J. Geophys. Res.,*in press. - Bachman, S.D., B. Fox-Kemper, J.R. Taylor, and L.N. Thomas (2017), Parameterization of Frontal Symmetric Instabilities. I: Theory for Resolved Fronts,
*Ocean Modelling,*109, 72-95. - Whitt, D.B, Levy, M, and J.R. Taylor (2017), Low and high frequency oscillatory winds synergistically enhance nutrient entrainment and phytoplankton at fronts,
*J. Geophys. Res.,*122, 2, 1016-1041. - Portwood, G. D., S.M. de Bruyn Kops, S. M., J.R. Taylor, H. Salehipour, and C.P. Caulfield (2016) Robust identification of dynamically distinct regions in stratified turbulence.
*J. Fluid Mech.*, 807 (R2) - Stamper, M., and J.R. Taylor (2016), The transition from symmetric to baroclinic instability in the Eady model,
*Ocean Dyn.,*DOI: 10.1007/s10236-016-1011-6. - Taylor, J.R., E. Deusebio, C.P. Caulfield, and R. Kerswell (2016), A new method for isolating turbulent states in transitional stratified plane Couette flow,
*J. Fluid Mech. Rapids*in press. - Shakespeare, C.J., and J.R. Taylor (2016), Spontaneous wave generation at strongly strained density fronts,
*J. Phys. Ocean.*46, 7. - Taylor, J.R. (2016), The influence of submesoscale restratification and convection on light-limited phytoplankton growth.
*Geophys. Res. Lett.*2016GL069106. - Bachman, S.D., and J.R. Taylor (2016). Numerical simulations of the equilibration between eddy-induced restratification and vertical mixing.
*Journal of Physical Oceanography*. 46, 919-935. - Shakespeare, C.J., and J.R. Taylor (2015). The spontaneous generation of inertia-gravity waves during frontogenesis forced by large strain: numerical simulations.
*Journal of Fluid Mechanics*. 772, 508-534. - Deusebio E., C.P. Caulfield and J.R. Taylor (2015). The intermittency boundary in stratified plane Couette flow
*Journal of Fluid Mechanics*. 781, 298-329. - Watteaux R., R.S. Stocker and J.R. Taylor (2015). Sensitivity of the nutrient uptake rate by chemotactic bacteria to physical and biological parameters in a turbulent environment
*Journal of Theoretical Biology.*387, 120-135. - Thomas L.N., J.R. Taylor, E.A. D'Asaro, C.M. Lee and J.M. Klymak (2015). Symmetric instability, inertial oscillations, and turbulence at the Gulf Stream
*Journal of Physical Oceanography*46, 197-217. - Enriquez R.M. and J.R. Taylor (2015). Numerical simulations of the competition between wind-driven mixing and surface heating in triggering spring phytoplankton blooms
*Journal of Marine Science*. doi:10.1093/icesjms/fsv071. - Shakespeare C.J. and J.R. Taylor (2014). The spontaneous generation of inertia-gravity
waves generated during frontogenesis forced by large strain: theory
*Journal of Fluid Mechanics*. 757, 817-853. - Kaminski, A.K., C.P. Caulfield, and J.R. Taylor (2014). Transient growth in strongly
stratified shear layers.
*Journal of Fluid Mechanics*. 758, R4. - Bachman, S. and J.R. Taylor (2014). Modelling of partially resolved oceanic symmetric
instability.
*Ocean Modelling*. 82, 15-27. - Thomas, L.N. and J.R. Taylor (2014). Damping of inertial motions by parametric subharmonic instability.
*Journal of Fluid Mechanics*. 743, 280-294. - Ferrari R., S.T. Merrifield and J.R. Taylor (2014). Shutdown of convection triggers increase of surface chlorophyll.
*Journal of Marine Systems*, http://dx.doi.org/10.1016/j.jmarsys.2014.02.009 - Shakespeare C.J. and J.R. Taylor (2013). A generalized mathematical model of geostrophic adjustment and frontogenesis: uniform potential vorticity.
*Journal of Fluid Mechanics*, 736, 366-413. - Thomas L.N., J.R. Taylor, R. Ferrari, and T.M. Joyce (2013). Symmetric instability in the Gulf Stream.
*Deep Sea Research II*, 91, 96-110. - Taylor, J.R. and R. Stocker (2012) Trade-Offs of Chemotactic foraging in turbulent water.
*Science*, 338, 6107, 675-679.

- Taylor, J.R. and R. Ferrari (2011) Ocean fronts trigger high latitude phytoplankton blooms.
*Geophysical Research Letters*, 38, L23601, doi:10.1029/2011GL049312

- Taylor, J.R. and R. Ferrari (2011) Shutdown of turbulent convection as a new criterion for the onset of spring phytoplankton blooms.
*Limnology and Oceanography*, 56(6) 2293-2307

- Thomas L.N. and J.R. Taylor (2010) Reduction of the usable wind-work on the general circulation by forced symmetric instability.
*Geophysical Research Letters*,**37**, L18606, doi: 10.1029/2010GL044680

- Taylor, J.R. and R. Ferrari (2010) Buoyancy and wind-driven convection at mixed layer density fronts.
*Journal of Physical Oceanography,***40**, 1222-1242

- Taylor J.R. and R. Ferrari (2009) On the equilibration of a symmetrically unstable front via a secondary shear instability.
*Journal of Fluid Mechanics*,**622**, 103-113

- Gayen B., S. Sarkar, and J.R. Taylor (2009) Large eddy simulation of a stratified boundary layer under an oscillatory current.
*Journal of Fluid Mechanics,*643, 233-266 - Taylor, J. R. and S. Sarkar (2008) Stratification effects in a bottom Ekman layer.
*Journal of Physical Oceanography***38**, 2535-2555

- Taylor, J. R. and S. Sarkar (2008) Direct and large eddy simulations of a bottom Ekman layer under and external stratification.
*International Journal of Heat and Fluid Flow***29**, 3, 721-732

- Taylor J.R. and S. Sarkar (2007) Internal gravity waves generated by a turbulent bottom Ekman layer.
*Journal of Fluid Mechanics,***590**, 1, 331-354

- Taylor J.R., S. Sarkar, and V. Armenio (2005) Large eddy simulation of stably stratified open channel flow.
*Phys. Fluids*,**17**, 116602

- Bennett A.F., J.R. Taylor, and B.S. Chua (2005) Lattice Boltzmann open boundaries for hydrodynamic models.
*Journal of Computational Physics*,**203**, 89-111

- Taylor J.R., K.K. Falkner, U. Schauer, and M. Meredith (2003) Quantitative considerations of dissolved Barium as a tracer in the Arctic Ocean.
*Journal of Geophysical Research*,**108**(C12), 3374

- Taylor J.R. and S. Sarkar (2007) Near-wall modeling for large eddy simulation of an oceanic bottom boundary layer.
*Proceedings of the Fifth International Symposium on Environmental Hydraulics*

- Taylor J.R. and S. Sarkar (2007) Internal wave generation by a turbulent bottom boundary layer.
*Proceedings of the Fifth International Symposium on Environmental Hydraulics*

- Taylor J.R. and S. Sarkar (2007) Large eddy simulation of a stratified benthic boundary layer.
*Turbulence and Shear Flow Phenomena-5 Proceedings*

- Taylor J.R., S. Sarkar, and V. Armenio (2005) Open channel flow stratified by a surface heat flux.
*Turbulence and Shear Flow Phenomena-4 Proceedings*

My PhD thesis:

Taylor J.R. (2008) Numerical Simulations of the Stratified Oceanic Bottom Boundary Layer, UCSD, advisor: Prof. Sutanu Sarkar