# Multi electrode analysis

## Documentation for package ‘sjemea’ version 0.39

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

aps.read.spikes | Read in the .mat file containing MEA data from Alan Litke
compute.ns | Compute network spikes
count.nab | Histogram routines to help compute the cross-correlation between a pair of spike trains.
feller.read.spikes | Read in a directory of spike times from Marla Feller and create a "spikes" data structure.
hist.ab | Histogram routines to help compute the cross-correlation between a pair of spike trains.
histbi.ab | Histogram routines to help compute the cross-correlation between a pair of spike trains.
iit.read.spikes | Read in the .mat file containing MEA data from Alan Litke
jay.read.spikes | Read in the .txt file from Neuroexplorer and create a "spikes" data structure.
litke.read.spikes | Read in the .mat file containing MEA data from Alan Litke
litke1layout | Layout of the MEA provided by Alan Litke, as used in the 2009 Neuron paper.
read.spikes | Read in the .txt file from Neuroexplorer and create a "spikes" data structure.
sanger.read.spikes | Read in a nexTimestamps file from Neuroexplorer and create a "spikes" data structure.
show.ns | Compute network spikes
spikes.to.bursts | Burst detection of MEA spike trains.
spikes.to.bursts.surprise | Burst detection of MEA spike trains.
test.count.hist.nab | Histogram routines to help compute the cross-correlation between a pair of spike trains.
test.count.hist2.nab | Histogram routines to help compute the cross-correlation between a pair of spike trains.
test.hist.ab | Histogram routines to help compute the cross-correlation between a pair of spike trains.
test.histograms.versus.r | Histogram routines to help compute the cross-correlation between a pair of spike trains.