Dr Nicola De Maio

Publications

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

HS Gweon, LP Shaw, J Swann, N De Maio, M AbuOun, R Niehus, ATM Hubbard, MJ Bowes, MJ Bailey, TEA Peto, SJ Hoosdally, AS Walker, RP Sebra, DW Crook, MF Anjum, DS Read, N Stoesser, REHAB consortium

– Environmental Microbiome

(2019)

14,

(doi: 10.1186/s40793-019-0347-1)

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, R Wick, M AbuOun, E Stubberfield, SJ Hoosdally, DW Crook, TEA Peto, AE Sheppard, MJ Bailey, DS Read, MF Anjum, AS Walker, N Stoesser, On Behalf Of The Rehab Consortium

– Microb Genom

(2019)

e000294

(doi: 10.1099/mgen.0.000294)

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.

R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, A Gavryushkina, J Heled, G Jones, D Kühnert, N De Maio, M Matschiner, FK Mendes, NF Müller, HA Ogilvie, L du Plessis, A Popinga, A Rambaut, D Rasmussen, I Siveroni, MA Suchard, C-H Wu, D Xie, C Zhang, T Stadler, AJ Drummond

– PLOS Computational Biology

(2019)

15,

e1006650

(doi: 10.1371/journal.pcbi.1006650)

Bayesian reconstruction of transmission within outbreaks using genomic variants

N De Maio, CJ Worby, DJ Wilson, N Stoesser

– PLoS Comput Biol

(2018)

14,

e1006117

(doi: 10.1371/journal.pcbi.1006117)

Two Distinct Patterns of Clostridium difficile Diversity Across Europe Indicating Contrasting Routes of Spread

DW Eyre, KA Davies, G Davis, WN Fawley, KE Dingle, N De Maio, A Karas, DW Crook, TEA Peto, AS Walker, MH Wilcox, EUCLID Study Group

– Clin Infect Dis

(2018)

67,

1035

(doi: 10.1093/cid/ciy252)

Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.

RJ Mostowy, NJ Croucher, N De Maio, C Chewapreecha, SJ Salter, P Turner, DM Aanensen, SD Bentley, X Didelot, C Fraser

– Molecular biology and evolution

(2017)

34,

2537

(doi: 10.1093/molbev/msx173)

Community-like genome in single cells of the sulfur bacterium Achromatium oxaliferum.

D Ionescu, M Bizic-Ionescu, N De Maio, H Cypionka, H-P Grossart

– Nature Communications

(2017)

455

(doi: 10.1038/s41467-017-00342-9)

Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission

J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, N De Maio, DW Eyre, G Toogood, NM Orsi, A Kirby, N Young, JF Turton, RLR Hill, KL Hopkins, N Woodford, TEA Peto, AS Walker, DW Crook, MH Wilcox

– J Antimicrob Chemother

(2017)

72,

3025

(doi: 10.1093/jac/dkx264)

The bacterial sequential markov coalescent

N De Maio, DJ Wilson

– Genetics

(2017)

206,

333

(doi: 10.1534/genetics.116.198796)

Frequent recombination of pneumococcal capsule highlights future risks of emergence of novel serotypes

RJ Mostowy, NJ Croucher, N De Maio, C Chewapreecha, SJ Salter, P Turner, DM Aanensen, SD Bentley, X Didelot, C Fraser

(2017)

098335

(doi: 10.1101/098335)

Department of Applied Mathematics and Theoretical Physics

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