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Department of Applied Mathematics and Theoretical Physics

Dr Gamze Gursoy

Gamze is an Assistant Professor in the Department of Applied Mathematics and Theoretical Physics at the University of Cambridge. She previously served as the Herbert Irving Assistant Professor in the Department of Biomedical Informatics at Columbia University. Prior to joining Columbia, she completed a K99/R00 postdoctoral fellowship in computational biology at Yale University and earned her Ph.D. in Bioinformatics from the University of Illinois at Chicago. Further information on her group and her research can be found at g2lab.org

Publications

African Green Monkey Cerebrospinal Fluid miRNome Captures Conserved miRNAs Relevant to Human Neurodegenerative Disease
S Dzigurski, R Al-Abri, X Li, MR Grasty, AC Rodrigues, MR Weed, JD Elsworth, MS Lawrence, YJ Heng, CS Bogsan, P Naderi Yeganeh, WA Hide, FJ Slack, G Gursoy, AD Miranker, BRP Brown
(2026)
(doi: 10.64898/2026.08.07.743104)
AE-AEPD: Repurposing Adversarial Evasion for Cross-Omics Linkage Defense
M Zohrabi, G Gursoy, R Bowler, K Kechris, F Banaei-Kashani
– Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics
(2026)
1
(doi: 10.1145/3807503.3819457)
The New York Genome Center ALS Consortium resource integrates postmortem tissue transcriptomics and whole genome sequencing to empower biological discovery
J Humphrey, A Oku, M Byrska-Bishop, AO Basile, US Evani, A Corvelo, A Tokolyi, K Bp, A Réal, Y Kim, ML Bond, WE Clarke, R Fu, H Geiger, S Chang, T Naito, B Jang, R Musunuri, WH Dredge, R Al-Abri, BN Hoover, D Manaa, J McClintock, FP Singh, MH Pedersen, A Runnels, N Propp, S Fennessey, H-H Won, MC Zody, G Narzisi, N Robine, T Lappalainen, D Fagegaltier, G Gürsoy, DA Knowles, T Raj, NYGC ALS Consortium, MB Harms, H Phatnani
– medRxiv
(2026)
2026.04.29.26350889
(doi: 10.64898/2026.04.29.26350889)
pC-SAC: A method for high-resolution 3D genome reconstruction from low-resolution Hi-C data.
JC Angel, N El Amraoui, G Gürsoy
– Nucleic Acids Research
(2025)
53,
gkaf289
(doi: 10.1093/nar/gkaf289)
Secure and scalable gene expression quantification with pQuant.
S Hong, CR Walker, YA Choi, G Gürsoy
– Nat Commun
(2025)
16,
2380
(doi: 10.1038/s41467-025-57393-6)
Secure and federated quantitative trait loci mapping with privateQTL
YA Choi, Y Kim, P Miao, T Lappalainen, G Gürsoy
– Cell genomics
(2025)
5,
100769
(doi: 10.1016/j.xgen.2025.100769)
ScatTR: Estimating the Size of Long Tandem Repeat Expansions from Short-Reads
R Al-Abri, G Gürsoy
(2025)
15647,
362
(doi: 10.1007/978-3-031-90252-9_40)
On the Overflow and p-adic Theory Applied to Homomorphic Encryption
J Blindenbach, JH Cheon, G Gürsoy, J Kang
(2025)
15349 LNCS,
268
(doi: 10.1007/978-3-031-76934-4_18)
SQUiD: ultra-secure storage and analysis of genetic data for the advancement of precision medicine
J Blindenbach, J Kang, S Hong, C Karam, T Lehner, G Gürsoy
– Genome Biol
(2024)
25,
314
(doi: 10.1186/s13059-024-03447-9)
Paired CRISPR screens to map gene regulation in cis and trans
X Xue, ZZ Gajic, CM Caragine, M Legut, C Walker, JYS Kim, X Wang, RE Yan, H-H Wessels, C Lu, N Bapodra, G Gürsoy, NE Sanjana
– bioRxiv
(2024)
2024.11.27.625752
(doi: 10.1101/2024.11.27.625752)
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Research Group

Computational Biology

Room

G1.11

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